SINGLE CELL LAB
Welcome to the Galaxy Europe Single Cell Lab!
Access Single Cell Omics analysis tutorials, tools, and workflows that let you analyse data without programming experience or private infrastructure.
How does this page relate to Galaxy Europe?
Galaxy Europe
This site singlecell.usegalaxy.eu is connected to the same server as usegalaxy.eu, but with an interface dedicated to helping our Single Cell researchers. Your history, jobs and data quota are shared with the "Main" Galaxy Europe website.
Learn to use Galaxy for single-cell analysis
Connected tutorials to train you to perform single-cell analysis fast!
The Galaxy Training Network has a learning pathway to introduce both using Galaxy and performing single-cell RNA-seq analysis. Check out the Single-Cell RNA-seq analysis pathway.
Instead of a learning pathway to learn to use Galaxy, you can skip straight to materials on performing single-cell RNA-seq analysis.
Using public data is free! Learn how to retrieve data from common sources.
Of course! Check out the Galaxy Project Single cell help forum
Find specific advice for troubleshooting Galaxy errors on the GTN.
No, please do not upload personal or sensitive, such as human health or clinical data. Please see our Privacy Policy page for definitions of sensitive and health-related information. Please also make sure you have read our Terms of Service, which covers hosting and analysis of research data.
Please read our Privacy Policy for information on your personal data and any data that you upload.
Please submit a quota request if your Galaxy account reaches its data storage limit. Requests are usually provisioned quickly if you provide a reasonable use case for your request.
Any user of Galaxy Europe can request support online!
Workflows
Workflows are chains of of tools that can be run together at the click of a button. The above tabs contain both peer reviewed and community submitted workflows.
Tag your workflows with #single-cell and share publicly with other users!
Additional common workflow tags for our community are:training(for workflows that correspond to the Galaxy Training Network's tutorials)data interoperabilitydeconvolutionspatial omics
You can browse through workflows before that have been reviewed by scientists.
IWC is an owner of peer-reviewed workflows within Galaxy.
WorkflowHub hosts high quality workflows. You can explore single-cell Galaxy workflows from WorkflowHub.
Anyone on Galaxy can share their workflow publicly - if your workflow is running well, share it with others!
You can search these community workflows below.
Search through community workflows tagged with #single-cell.
The GTN's Pan-Galactic Workflow Search allows you to search for workflows across all of Galaxy!
Learn how to publish your workflow to share your work with the Galaxy community.
Community
Check out some suggestions on how you can connect with the community.
This Galaxy space is the result of hard, collaborative work by many contributors . It is maintained by the Galaxy Single-cell & sPatial Omics SPOC Community of Practice. This group unites scientists like yourself with software developers and bioinformaticians to create, share, and test resources to make single-cell & spatial omics analysis easier. Check out our site and join our community!
Learn about the governance structure of Galaxy communities on the GTN.
Single Cell and Spatial Omics community support
News and Events
Our Data Policy
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| For all different storage options, for detailed explanations of data rention policies, and ways how to increase your quota please refer to our dedicated storage site. | Processed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics). If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted. | Any user data uploaded to our FTP server should be imported into Galaxy as soon as possible. Data left in FTP folders for more than 3 months, will be deleted. | The Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions. |
